Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
CESC rs12680498 chr8:144406881 G/A 6.13E-5 292 27.2 21.1 18 KM Plot
CESC rs12706538 chr7:123211572 T/C 3.78E-6 293 24 18.17 3.72 KM Plot
CESC rs12741924 chr1:112298875 G/C 0 296 21.33 20.47 4.07 KM Plot
CESC rs12806061 chr11:3008404 G/A 5.32E-5 295 21.4 21.1 21.73 KM Plot
CESC rs12861519 chr13:100029555 A/C 1.18E-5 292 23.92 21.2 14.8 KM Plot
CESC rs1288351 chr1:53624338 A/G 7.51E-6 299 1.53 20.03 22.88 KM Plot
CESC rs12927044 chr16:71930105 C/A 2.87E-6 288 23.83 18.45 5.53 KM Plot
CESC rs13003061 chr2:3482722 C/T 2.42E-8 297 21.07 27.9 1.43 KM Plot
CESC rs13006095 chr2:3486352 G/A 4.01E-8 289 20.92 29.27 1.43 KM Plot
CESC rs13023769 chr2:3491430 C/T 2.31E-8 293 20.92 31.22 1.43 KM Plot
CESC rs13038092 chr20:25249734 C/T 0 299 2.47 21.2 21.27 KM Plot
CESC rs13059340 chr3:161062631 T/C 3.6E-5 296 24.9 20.13 19.73 KM Plot
CESC rs13062740 chr3:161024208 G/A 1.48E-5 296 25.27 19.53 19.4 KM Plot
CESC rs13073147 chr3:161045237 T/C 9.95E-6 297 26.27 20.38 19.05 KM Plot
CESC rs13074029 chr3:99881567 C/T 3.39E-5 293 21.2 20.15 10.17 KM Plot